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|
!> This module contains general routines for interacting with the file system
!!
module fpm_filesystem
use,intrinsic :: iso_fortran_env, only : stdin=>input_unit, stdout=>output_unit, stderr=>error_unit
use fpm_environment, only: get_os_type, &
OS_UNKNOWN, OS_LINUX, OS_MACOS, OS_WINDOWS, &
OS_CYGWIN, OS_SOLARIS, OS_FREEBSD, OS_OPENBSD
use fpm_environment, only: separator, get_env, os_is_unix
use fpm_strings, only: f_string, replace, string_t, split, notabs, str_begins_with_str
use iso_c_binding, only: c_char, c_ptr, c_int, c_null_char, c_associated, c_f_pointer
use fpm_error, only : fpm_stop
implicit none
private
public :: basename, canon_path, dirname, is_dir, join_path, number_of_rows, list_files, env_variable, &
mkdir, exists, get_temp_filename, windows_path, unix_path, getline, delete_file
public :: fileopen, fileclose, filewrite, warnwrite, parent_dir
public :: is_hidden_file
public :: read_lines, read_lines_expanded
public :: which, run, LINE_BUFFER_LEN
integer, parameter :: LINE_BUFFER_LEN = 1000
#ifndef FPM_BOOTSTRAP
interface
function c_opendir(dir) result(r) bind(c, name="c_opendir")
import c_char, c_ptr
character(kind=c_char), intent(in) :: dir(*)
type(c_ptr) :: r
end function c_opendir
function c_readdir(dir) result(r) bind(c, name="c_readdir")
import c_ptr
type(c_ptr), intent(in), value :: dir
type(c_ptr) :: r
end function c_readdir
function c_closedir(dir) result(r) bind(c, name="closedir")
import c_ptr, c_int
type(c_ptr), intent(in), value :: dir
integer(kind=c_int) :: r
end function c_closedir
function c_get_d_name(dir) result(r) bind(c, name="get_d_name")
import c_ptr
type(c_ptr), intent(in), value :: dir
type(c_ptr) :: r
end function c_get_d_name
function c_is_dir(path) result(r) bind(c, name="c_is_dir")
import c_char, c_int
character(kind=c_char), intent(in) :: path(*)
integer(kind=c_int) :: r
end function c_is_dir
end interface
#endif
contains
!> return value of environment variable
subroutine env_variable(var, name)
character(len=:), allocatable, intent(out) :: var
character(len=*), intent(in) :: name
integer :: length, stat
call get_environment_variable(name, length=length, status=stat)
if (stat /= 0) return
allocate(character(len=length) :: var)
if (length > 0) then
call get_environment_variable(name, var, status=stat)
if (stat /= 0) then
deallocate(var)
return
end if
end if
end subroutine env_variable
!> Extract filename from path with/without suffix
function basename(path,suffix) result (base)
character(*), intent(In) :: path
logical, intent(in), optional :: suffix
character(:), allocatable :: base
character(:), allocatable :: file_parts(:)
logical :: with_suffix
if (.not.present(suffix)) then
with_suffix = .true.
else
with_suffix = suffix
end if
call split(path,file_parts,delimiters='\/')
if(size(file_parts).gt.0)then
base = trim(file_parts(size(file_parts)))
else
base = ''
endif
if(.not.with_suffix)then
call split(base,file_parts,delimiters='.')
if(size(file_parts).ge.2)then
base = trim(file_parts(size(file_parts)-1))
endif
endif
end function basename
!> Canonicalize path for comparison
!! * Handles path string redundancies
!! * Does not test existence of path
!!
!! To be replaced by realpath/_fullname in stdlib_os
!!
!! FIXME: Lot's of ugly hacks following here
function canon_path(path)
character(len=*), intent(in) :: path
character(len=:), allocatable :: canon_path
character(len=:), allocatable :: nixpath
integer :: istart, iend, nn, last
logical :: is_path, absolute
nixpath = unix_path(path)
istart = 0
nn = 0
iend = 0
absolute = nixpath(1:1) == "/"
if (absolute) then
canon_path = "/"
else
canon_path = ""
end if
do while(iend < len(nixpath))
call next(nixpath, istart, iend, is_path)
if (is_path) then
select case(nixpath(istart:iend))
case(".", "") ! always drop empty paths
case("..")
if (nn > 0) then
last = scan(canon_path(:len(canon_path)-1), "/", back=.true.)
canon_path = canon_path(:last)
nn = nn - 1
else
if (.not. absolute) then
canon_path = canon_path // nixpath(istart:iend) // "/"
end if
end if
case default
nn = nn + 1
canon_path = canon_path // nixpath(istart:iend) // "/"
end select
end if
end do
if (len(canon_path) == 0) canon_path = "."
if (len(canon_path) > 1 .and. canon_path(len(canon_path):) == "/") then
canon_path = canon_path(:len(canon_path)-1)
end if
contains
subroutine next(string, istart, iend, is_path)
character(len=*), intent(in) :: string
integer, intent(inout) :: istart
integer, intent(inout) :: iend
logical, intent(inout) :: is_path
integer :: ii, nn
character :: tok
nn = len(string)
if (iend >= nn) then
istart = nn
iend = nn
return
end if
ii = min(iend + 1, nn)
tok = string(ii:ii)
is_path = tok /= '/'
if (.not.is_path) then
is_path = .false.
istart = ii
iend = ii
return
end if
istart = ii
do ii = min(iend + 1, nn), nn
tok = string(ii:ii)
select case(tok)
case('/')
exit
case default
iend = ii
cycle
end select
end do
end subroutine next
end function canon_path
!> Extract dirname from path
function dirname(path) result (dir)
character(*), intent(in) :: path
character(:), allocatable :: dir
dir = path(1:scan(path,'/\',back=.true.))
if (len_trim(dir) == 0) dir = "."
end function dirname
!> Extract dirname from path
function parent_dir(path) result (dir)
character(*), intent(in) :: path
character(:), allocatable :: dir
dir = path(1:scan(path,'/\',back=.true.)-1)
end function parent_dir
!> test if a name matches an existing directory path
logical function is_dir(dir)
character(*), intent(in) :: dir
integer :: stat
select case (get_os_type())
case (OS_UNKNOWN, OS_LINUX, OS_MACOS, OS_CYGWIN, OS_SOLARIS, OS_FREEBSD, OS_OPENBSD)
call execute_command_line("test -d " // dir , exitstat=stat)
case (OS_WINDOWS)
call execute_command_line('cmd /c "if not exist ' // windows_path(dir) // '\ exit /B 1"', exitstat=stat)
end select
is_dir = (stat == 0)
end function is_dir
!> test if a file is hidden
logical function is_hidden_file(file_basename) result(r)
character(*), intent(in) :: file_basename
if (len(file_basename) <= 2) then
r = .false.
else
r = str_begins_with_str(file_basename, '.')
end if
end function is_hidden_file
!> Construct path by joining strings with os file separator
function join_path(a1,a2,a3,a4,a5) result(path)
character(len=*), intent(in) :: a1, a2
character(len=*), intent(in), optional :: a3, a4, a5
character(len=:), allocatable :: path
character(len=1) :: filesep
logical, save :: has_cache = .false.
character(len=1), save :: cache = '/'
!$omp threadprivate(has_cache, cache)
if (has_cache) then
filesep = cache
else
select case (get_os_type())
case default
filesep = '/'
case (OS_WINDOWS)
filesep = '\'
end select
cache = filesep
has_cache = .true.
end if
path = a1 // filesep // a2
if (present(a3)) then
path = path // filesep // a3
else
return
end if
if (present(a4)) then
path = path // filesep // a4
else
return
end if
if (present(a5)) then
path = path // filesep // a5
else
return
end if
end function join_path
!> Determine number or rows in a file given a LUN
integer function number_of_rows(s) result(nrows)
integer,intent(in)::s
integer :: ios
character(len=100) :: r
rewind(s)
nrows = 0
do
read(s, '(A)', iostat=ios) r
if (ios /= 0) exit
nrows = nrows + 1
end do
rewind(s)
end function number_of_rows
!> read lines into an array of TYPE(STRING_T) variables expanding tabs
function read_lines_expanded(fh) result(lines)
integer, intent(in) :: fh
type(string_t), allocatable :: lines(:)
integer :: i
integer :: ilen
character(LINE_BUFFER_LEN) :: line_buffer_read, line_buffer_expanded
allocate(lines(number_of_rows(fh)))
do i = 1, size(lines)
read(fh, '(A)') line_buffer_read
call notabs(line_buffer_read, line_buffer_expanded, ilen)
lines(i)%s = trim(line_buffer_expanded)
end do
end function read_lines_expanded
!> read lines into an array of TYPE(STRING_T) variables
function read_lines(fh) result(lines)
integer, intent(in) :: fh
type(string_t), allocatable :: lines(:)
integer :: i
character(LINE_BUFFER_LEN) :: line_buffer
allocate(lines(number_of_rows(fh)))
do i = 1, size(lines)
read(fh, '(A)') line_buffer
lines(i)%s = trim(line_buffer)
end do
end function read_lines
!> Create a directory. Create subdirectories as needed
subroutine mkdir(dir, echo)
character(len=*), intent(in) :: dir
logical, intent(in), optional :: echo
integer :: stat
logical :: echo_local
if(present(echo))then
echo_local=echo
else
echo_local=.true.
end if
if (is_dir(dir)) return
select case (get_os_type())
case (OS_UNKNOWN, OS_LINUX, OS_MACOS, OS_CYGWIN, OS_SOLARIS, OS_FREEBSD, OS_OPENBSD)
call execute_command_line('mkdir -p ' // dir, exitstat=stat)
if (echo_local) then
write (*, '(" + ",2a)') 'mkdir -p ' // dir
end if
case (OS_WINDOWS)
call execute_command_line("mkdir " // windows_path(dir), exitstat=stat)
if (echo_local) then
write (*, '(" + ",2a)') 'mkdir ' // windows_path(dir)
end if
end select
if (stat /= 0) then
call fpm_stop(1, '*mkdir*:directory creation failed')
end if
end subroutine mkdir
#ifndef FPM_BOOTSTRAP
!> Get file & directory names in directory `dir` using iso_c_binding.
!!
!! - File/directory names return are relative to cwd, ie. preprended with `dir`
!! - Includes files starting with `.` except current directory and parent directory
!!
recursive subroutine list_files(dir, files, recurse)
character(len=*), intent(in) :: dir
type(string_t), allocatable, intent(out) :: files(:)
logical, intent(in), optional :: recurse
integer :: i
type(string_t), allocatable :: dir_files(:)
type(string_t), allocatable :: sub_dir_files(:)
type(c_ptr) :: dir_handle
type(c_ptr) :: dir_entry_c
character(len=:,kind=c_char), allocatable :: fortran_name
character(len=:), allocatable :: string_fortran
integer, parameter :: N_MAX = 256
type(string_t) :: files_tmp(N_MAX)
integer(kind=c_int) :: r
if (c_is_dir(dir(1:len_trim(dir))//c_null_char) .eq. 0) then
allocate (files(0))
return
end if
dir_handle = c_opendir(dir(1:len_trim(dir))//c_null_char)
if (.not. c_associated(dir_handle)) then
print *, 'c_opendir() failed'
error stop
end if
i = 0
allocate(files(0))
do
dir_entry_c = c_readdir(dir_handle)
if (.not. c_associated(dir_entry_c)) then
exit
else
string_fortran = f_string(c_get_d_name(dir_entry_c))
if ((string_fortran .eq. '.' .or. string_fortran .eq. '..')) then
cycle
end if
i = i + 1
if (i .gt. N_MAX) then
files = [files, files_tmp]
i = 1
end if
files_tmp(i)%s = join_path(dir, string_fortran)
end if
end do
r = c_closedir(dir_handle)
if (r .ne. 0) then
print *, 'c_closedir() failed'
error stop
end if
if (i .gt. 0) then
files = [files, files_tmp(1:i)]
end if
if (present(recurse)) then
if (recurse) then
allocate(sub_dir_files(0))
do i=1,size(files)
if (c_is_dir(files(i)%s//c_null_char) .ne. 0) then
call list_files(files(i)%s, dir_files, recurse=.true.)
sub_dir_files = [sub_dir_files, dir_files]
end if
end do
files = [files, sub_dir_files]
end if
end if
end subroutine list_files
#else
!> Get file & directory names in directory `dir`.
!!
!! - File/directory names return are relative to cwd, ie. preprended with `dir`
!! - Includes files starting with `.` except current directory and parent directory
!!
recursive subroutine list_files(dir, files, recurse)
character(len=*), intent(in) :: dir
type(string_t), allocatable, intent(out) :: files(:)
logical, intent(in), optional :: recurse
integer :: stat, fh, i
character(:), allocatable :: temp_file
type(string_t), allocatable :: dir_files(:)
type(string_t), allocatable :: sub_dir_files(:)
if (.not. is_dir(dir)) then
allocate (files(0))
return
end if
allocate (temp_file, source=get_temp_filename())
select case (get_os_type())
case (OS_UNKNOWN, OS_LINUX, OS_MACOS, OS_CYGWIN, OS_SOLARIS, OS_FREEBSD, OS_OPENBSD)
call execute_command_line('ls -A ' // dir // ' > ' // temp_file, &
exitstat=stat)
case (OS_WINDOWS)
call execute_command_line('dir /b ' // windows_path(dir) // ' > ' // temp_file, &
exitstat=stat)
end select
if (stat /= 0) then
call fpm_stop(2,'*list_files*:directory listing failed')
end if
open (newunit=fh, file=temp_file, status='old')
files = read_lines(fh)
close(fh,status="delete")
do i=1,size(files)
files(i)%s = join_path(dir,files(i)%s)
end do
if (present(recurse)) then
if (recurse) then
allocate(sub_dir_files(0))
do i=1,size(files)
if (is_dir(files(i)%s)) then
call list_files(files(i)%s, dir_files, recurse=.true.)
sub_dir_files = [sub_dir_files, dir_files]
end if
end do
files = [files, sub_dir_files]
end if
end if
end subroutine list_files
#endif
!> test if pathname already exists
logical function exists(filename) result(r)
character(len=*), intent(in) :: filename
inquire(file=filename, exist=r)
end function
!> Get a unused temporary filename
!! Calls posix 'tempnam' - not recommended, but
!! we have no security concerns for this application
!! and use here is temporary.
!! Works with MinGW
function get_temp_filename() result(tempfile)
!
use iso_c_binding, only: c_ptr, C_NULL_PTR, c_f_pointer
character(:), allocatable :: tempfile
type(c_ptr) :: c_tempfile_ptr
character(len=1), pointer :: c_tempfile(:)
interface
function c_tempnam(dir,pfx) result(tmp) bind(c,name="tempnam")
import
type(c_ptr), intent(in), value :: dir
type(c_ptr), intent(in), value :: pfx
type(c_ptr) :: tmp
end function c_tempnam
subroutine c_free(ptr) BIND(C,name="free")
import
type(c_ptr), value :: ptr
end subroutine c_free
end interface
c_tempfile_ptr = c_tempnam(C_NULL_PTR, C_NULL_PTR)
call c_f_pointer(c_tempfile_ptr,c_tempfile,[LINE_BUFFER_LEN])
tempfile = f_string(c_tempfile)
call c_free(c_tempfile_ptr)
end function get_temp_filename
!> Replace file system separators for windows
function windows_path(path) result(winpath)
character(*), intent(in) :: path
character(:), allocatable :: winpath
integer :: idx
winpath = path
idx = index(winpath,'/')
do while(idx > 0)
winpath(idx:idx) = '\'
idx = index(winpath,'/')
end do
end function windows_path
!> Replace file system separators for unix
function unix_path(path) result(nixpath)
character(*), intent(in) :: path
character(:), allocatable :: nixpath
integer :: idx
nixpath = path
idx = index(nixpath,'\')
do while(idx > 0)
nixpath(idx:idx) = '/'
idx = index(nixpath,'\')
end do
end function unix_path
!> read a line of arbitrary length into a CHARACTER variable from the specified LUN
subroutine getline(unit, line, iostat, iomsg)
!> Formatted IO unit
integer, intent(in) :: unit
!> Line to read
character(len=:), allocatable, intent(out) :: line
!> Status of operation
integer, intent(out) :: iostat
!> Error message
character(len=:), allocatable, optional :: iomsg
character(len=LINE_BUFFER_LEN) :: buffer
character(len=LINE_BUFFER_LEN) :: msg
integer :: size
integer :: stat
allocate(character(len=0) :: line)
do
read(unit, '(a)', advance='no', iostat=stat, iomsg=msg, size=size) &
& buffer
if (stat > 0) exit
line = line // buffer(:size)
if (stat < 0) then
if (is_iostat_eor(stat)) then
stat = 0
end if
exit
end if
end do
if (stat /= 0) then
if (present(iomsg)) iomsg = trim(msg)
end if
iostat = stat
end subroutine getline
!> delete a file by filename
subroutine delete_file(file)
character(len=*), intent(in) :: file
logical :: exist
integer :: unit
inquire(file=file, exist=exist)
if (exist) then
open(file=file, newunit=unit)
close(unit, status="delete")
end if
end subroutine delete_file
!> write trimmed character data to a file if it does not exist
subroutine warnwrite(fname,data)
character(len=*),intent(in) :: fname
character(len=*),intent(in) :: data(:)
if(.not.exists(fname))then
call filewrite(fname,data)
else
write(stderr,'(*(g0,1x))')'<INFO> ',fname,&
& 'already exists. Not overwriting'
endif
end subroutine warnwrite
!> procedure to open filename as a sequential "text" file
subroutine fileopen(filename,lun,ier)
character(len=*),intent(in) :: filename
integer,intent(out) :: lun
integer,intent(out),optional :: ier
integer :: ios
character(len=256) :: message
message=' '
ios=0
if(filename.ne.' ')then
open(file=filename, &
& newunit=lun, &
& form='formatted', & ! FORM = FORMATTED | UNFORMATTED
& access='sequential', & ! ACCESS = SEQUENTIAL| DIRECT | STREAM
& action='write', & ! ACTION = READ|WRITE| READWRITE
& position='rewind', & ! POSITION= ASIS | REWIND | APPEND
& status='new', & ! STATUS = NEW| REPLACE| OLD| SCRATCH| UNKNOWN
& iostat=ios, &
& iomsg=message)
else
lun=stdout
ios=0
endif
if(ios.ne.0)then
lun=-1
if(present(ier))then
ier=ios
else
call fpm_stop(3,'*fileopen*:'//filename//':'//trim(message))
endif
endif
end subroutine fileopen
!> simple close of a LUN. On error show message and stop (by default)
subroutine fileclose(lun,ier)
integer,intent(in) :: lun
integer,intent(out),optional :: ier
character(len=256) :: message
integer :: ios
if(lun.ne.-1)then
close(unit=lun,iostat=ios,iomsg=message)
if(ios.ne.0)then
if(present(ier))then
ier=ios
else
call fpm_stop(4,'*fileclose*:'//trim(message))
endif
endif
endif
end subroutine fileclose
!> procedure to write filedata to file filename
subroutine filewrite(filename,filedata)
character(len=*),intent(in) :: filename
character(len=*),intent(in) :: filedata(:)
integer :: lun, i, ios
character(len=256) :: message
call fileopen(filename,lun)
if(lun.ne.-1)then ! program currently stops on error on open, but might
! want it to continue so -1 (unallowed LUN) indicates error
! write file
do i=1,size(filedata)
write(lun,'(a)',iostat=ios,iomsg=message)trim(filedata(i))
if(ios.ne.0)then
call fpm_stop(5,'*filewrite*:'//filename//':'//trim(message))
endif
enddo
endif
! close file
call fileclose(lun)
end subroutine filewrite
function which(command) result(pathname)
!>
!!##NAME
!! which(3f) - [M_io:ENVIRONMENT] given a command name find the pathname by searching
!! the directories in the environment variable $PATH
!! (LICENSE:PD)
!!
!!##SYNTAX
!! function which(command) result(pathname)
!!
!! character(len=*),intent(in) :: command
!! character(len=:),allocatable :: pathname
!!
!!##DESCRIPTION
!! Given a command name find the first file with that name in the directories
!! specified by the environment variable $PATH.
!!
!!##OPTIONS
!! COMMAND the command to search for
!!
!!##RETURNS
!! PATHNAME the first pathname found in the current user path. Returns blank
!! if the command is not found.
!!
!!##EXAMPLE
!!
!! Sample program:
!!
!! Checking the error message and counting lines:
!!
!! program demo_which
!! use M_io, only : which
!! implicit none
!! write(*,*)'ls is ',which('ls')
!! write(*,*)'dir is ',which('dir')
!! write(*,*)'install is ',which('install')
!! end program demo_which
!!
!!##AUTHOR
!! John S. Urban
!!##LICENSE
!! Public Domain
character(len=*),intent(in) :: command
character(len=:),allocatable :: pathname, checkon, paths(:), exts(:)
integer :: i, j
pathname=''
call split(get_env('PATH'),paths,delimiters=merge(';',':',separator().eq.'\'))
SEARCH: do i=1,size(paths)
checkon=trim(join_path(trim(paths(i)),command))
select case(separator())
case('/')
if(exists(checkon))then
pathname=checkon
exit SEARCH
endif
case('\')
if(exists(checkon))then
pathname=checkon
exit SEARCH
endif
if(exists(checkon//'.bat'))then
pathname=checkon//'.bat'
exit SEARCH
endif
if(exists(checkon//'.exe'))then
pathname=checkon//'.exe'
exit SEARCH
endif
call split(get_env('PATHEXT'),exts,delimiters=';')
do j=1,size(exts)
if(exists(checkon//'.'//trim(exts(j))))then
pathname=checkon//'.'//trim(exts(j))
exit SEARCH
endif
enddo
end select
enddo SEARCH
end function which
!> echo command string and pass it to the system for execution
subroutine run(cmd,echo,exitstat,verbose,redirect)
character(len=*), intent(in) :: cmd
logical,intent(in),optional :: echo
integer, intent(out),optional :: exitstat
logical, intent(in), optional :: verbose
character(*), intent(in), optional :: redirect
logical :: echo_local, verbose_local
character(:), allocatable :: redirect_str
character(:), allocatable :: line
integer :: stat, fh, ios
if(present(echo))then
echo_local=echo
else
echo_local=.true.
end if
if(present(verbose))then
verbose_local=verbose
else
verbose_local=.true.
end if
if (present(redirect)) then
redirect_str = ">"//redirect//" 2>&1"
else
if(verbose_local)then
! No redirection but verbose output
redirect_str = ""
else
! No redirection and non-verbose output
if (os_is_unix()) then
redirect_str = ">/dev/null 2>&1"
else
redirect_str = ">NUL 2>&1"
end if
end if
end if
if(echo_local) print *, '+ ', cmd
call execute_command_line(cmd//redirect_str, exitstat=stat)
if (verbose_local.and.present(redirect)) then
open(newunit=fh,file=redirect,status='old')
do
call getline(fh, line, ios)
if (ios /= 0) exit
write(*,'(A)') trim(line)
end do
close(fh)
end if
if (present(exitstat)) then
exitstat = stat
else
if (stat /= 0) then
call fpm_stop(1,'*run*:Command failed')
end if
end if
end subroutine run
end module fpm_filesystem
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